Calcium carbonate: the leftover material when shells, bones etc. breakdown.
Coral bleaching: when corals push out algae that live inside them, turning the coral white. The algae help coral get most of their energy, so bleached corals are at risk of starving to death. ... more
Coral fragmentation: when a coral breaks apart and each piece grows into a clone of the original.
Gradient: a slow or gradual change from one thing to another; a slope or hill.
Limestone: a rock made from calcium carbonate.
Nematocyst: toxic cells found in sea anemone, jellyfish, and corals used for defense.
Photosynthesizer: an organism that is capable of photosynthesis.
Polyp: small individual animals like sea anemones or members of a coral colony that have a vase-shaped body with a mouth surrounded by tentacles. ... more

The coral animal

The anatomy of a coral polyp
A coral polyp sits within a corallite on the coral skeleton. It is a cup like divot where the polyp can slowly add carbonate to the colony. Image by NOAA, MarkusZi; translated by Earlza.

If you’ve seen a jellyfish or a sea anemone, then you may be more familiar with coral polyps than you think. Their structures are very similar. Polyps are mainly just a stomach.

Most of what we can see is the polyp’s mouth. When not contracted, it is surrounded by tentacles. They use these to catch food and to defend themselves. Their tentacles have nematocysts, making them like tiny venomous stingers. All the polyps are attached to a hard surface, one they each helped to create.

Coral polyps come in various sizes. Some choose to live alone on the reef as a large solitary polyp much like a sea anemone. Others grow in colonies of hundreds to thousands of smaller polyps.

The hard stuff

The anatomy of a coral polyp
A coral skeleton can remain long after the colony has died and can still provide habitat for many species. Eventually processes of erosion will weather away at the structure. Image by dom974 via Pixabay.

Corals often get misidentified as rocks… and that’s not too surprising. Coral polyps mix carbon dioxide with calcium in the water to build a calcium carbonate base. Calcium carbonate is also known as limestone (a rock!). All the polyps in a coral colony grow outward from this base, adding more limestone to fill in the gaps. This base forms the colony’s skeleton.

It takes corals quite some time to build their skeletons. They grow only a few centimeters each year. But they also shield the reef and the coastline from ocean storms. Corals can absorb a lot of the energy from waves that crash against them. This can sometimes cause small bits of coral to break off. Some types of corals can then grow new colonies from these broken pieces. This process is called fragmentation.

Partnering up

The true magic of every coral reef hides within every coral polyp. In their tissue they house a special resident. An algae called zooxanthellae that lives in symbiosis with their host. These little photosynthesizers provide most of the energy needed for their coral partner. In return the coral gives them nutrients and a safe place to live.

A series of four images showing the whole coral, then zooming in, showing the individual polyps, and the symbionts
A coral colony is not just one organism, but a collection of organisms living in symbiosis. Zooxanthellae live inside a coral’s tissue alongside other microbes like bacteria. Image by John A. Burt.

For this partnership to last conditions need to be just right. Waters shallower than 30 meters (~100 ft) provide the perfect setting for tropical corals and their partners. Yet, big changes in temperature, light, or pollution can stress their relationship. This can cause corals to kick out their algae. Without these partners, corals lose their color and turn pale white, which is called coral bleaching. If they stay apart too long, the coral could die from starvation.

Get in the zone

From the outside it may seem that a reef is all the same. But neighborhoods exist just like any other city. These are known as reef zones. Every zone has unique conditions making it suitable for only certain types of organisms.

An image showing the reef zones, including the inner reef, the reef crest, and the outer reef
A single reef can stretch from just off the shoreline to much deeper depths as it follows the continental slope which naturally descends into the deep sea. Closest to shore is the inner reef, then the reef crest, then the outer reef. All are on a bed of limestone. Image by the USGS.

From the shore, you are likely to first enter a reef flat. For marine creatures this is a tough place to live. The temperature, light, and saltiness of the water here changes often. Only the hardiest of organisms call this neighborhood home. Further in is the highest point of a reef, called the reef crest. This zone gets the most sunlight, but it also gets hit by the strongest waves. Be careful not to get swept away!

Continuing toward the sea, the reef starts to slope downward into deeper water. These sloping neighborhoods are called the fore reef. Here, sunlight quickly becomes scarce. You will also find the most diverse reef communities. This zone is well-protected and has a gradient of light. Different species have adapted here to live at specific depths.

You may need to edit author's name to meet the style formats, which are in most cases "Last name, First name."
https://askabiologist.asu.edu/anatomy-coral-reef

Bibliographic details:

  • Article: Anatomy of a coral reef
  • Author(s): Dr. Biology
  • Publisher: Arizona State University School of Life Sciences Ask A Biologist
  • Site name: ASU - Ask A Biologist
  • Date published: 29 Jul, 2025
  • Date accessed:
  • Link: https://askabiologist.asu.edu/anatomy-coral-reef

APA Style

Dr. Biology. (Tue, 07/29/2025 - 10:37). Anatomy of a coral reef. ASU - Ask A Biologist. Retrieved from https://askabiologist.asu.edu/anatomy-coral-reef

American Psychological Association. For more info, see http://owl.english.purdue.edu/owl/resource/560/10/

Chicago Manual of Style

Dr. Biology. "Anatomy of a coral reef". ASU - Ask A Biologist. 29 Jul 2025. https://askabiologist.asu.edu/anatomy-coral-reef

MLA 2017 Style

Dr. Biology. "Anatomy of a coral reef". ASU - Ask A Biologist. 29 Jul 2025. ASU - Ask A Biologist, Web. https://askabiologist.asu.edu/anatomy-coral-reef

Modern Language Association, 7th Ed. For more info, see http://owl.english.purdue.edu/owl/resource/747/08/
Coral polyps close up

The colors of coral come from their symbiotic partners, an algae called zooxanthella. 

Be Part of
Ask A Biologist

By volunteering, or simply sending us feedback on the site. Scientists, teachers, writers, illustrators, and translators are all important to the program. If you are interested in helping with the website we have a Volunteers page to get the process started.

Donate icon  Contribute